About the ELMI

ELMI was created in 2001 to establish a unique communication network between European scientists working in the field of light microscopy and the manufacturers of their equipment.

OMERO workshop, 7-8 November 23, CRG Barcelona, Spain

The Open Microscopy Environment (OME) is an open-source software project that develops tools to enable access, analysis, visualization, sharing and publishing microscopy data. OMERO, a component of OME, is a client-server software, designed to efficiently manage, visualize and analyze microscopy images and associated metadata.

The workshop includes presentations from OME developers and experts in the field as well as open question sessions and multiple hands-on sessions. On Day 1, the OME Team will demonstrate how to manage, analyze and publish your data with OMERO. A hands-on practical experience using OMERO with datasets from a wide range of imaging modalities, including EM, time-lapse, confocal and super-resolution microscopy will be given. Day 2 will cover data analysis with OMERO using third party tools such as FIJI/ImageJ, CellProfiler and potentially napari and ilastik (hand-outs with workflows including Python and R usage with OMERO will be available).

Please note that the workshop is a hybrid event, allowing both on-site and online participation. On-site availability is limited to 18 places, while online participation is limited to 20 participants. Selections for participation will be based on the responses provided during registration. Successfully registered participants will receive additional course details during the first week of October. Any required workshop materials will be shared in advance.   
If you would like to learn more about OME visit www.openmicroscopy.org for more info.

Main Goals

By the conclusion of this course, participants will have gained a comprehensive understanding of the following key topics:


Speakers & Instructors

For additional information please check the course pages.
Application deadline 2 October 2023